これに対し、近年、計測器の高精度化・低価格化、計算機の高速化と記憶装置の大容量化に伴って、電磁波を安価に長期間計測し、その計測データに統計処理等の加工を施すことが容易になったことから、こうした脅威は軍事分野から一般的な製品へと拡大しています。具体的には、デスクトップ及びノートブックパーソナルコンピュータ (PC : Personal Computer) 等のモニタ画面情報、タブレットやスマートフォンの画面情報及び打鍵情報、PC内部における商用Central Processing Unit (CPU)の演算情報、プリンタの印字情報、キーボードの入力キー情報、暗号処理を行うデバイス内の秘密鍵情報の電磁波を通じた漏えいなどに関する脅威が報告されています。
My name is Ming Huang, an assistant professor in Computational Systems Biology Laboratory. After I graduated from the University of Aizu in 2012, I was a postdoc fellow of NAIST for three and a half years. In this essay, I would like to share some of my thinking related to my study filed with you all.
The technologies featured with ‘wearable’, ‘nonconscious’ characteristics have been being popular in the past few years. It is one of the major domains that will output tremendous amount of data about personal health, and it is a major part of health informatics. Health informatics also involves the information of personal medical data in the form of electronic medical records (EMRs). On the other side, the blueprint of life−the genomic information, is the fundamental factor that bears great amount of information about the origin of life. These two domains together, with the personal health being its focus, are supposed to be able to describe how people adjust themselves to adapt to the external environment and stimulation. I had a great opportunity to engage in studies of the health informatics and now extend into bioinformatics in Computational Systems Biology Lab. Therefore, I would like to introduce parts of ours studies on health informatics and then my opinions about integrating the health informatics with bioinformatics for a novel understanding about human health.
Health informatics involves the aspects of acquiring, storing, retrieving and using of the healthcare information and I would only talk about the acquiring and using aspects here.
Acquiring healthcare information
There are two major sources of the healthcare information, one is generated in hospital describing personal medical, treatment histories and biopsy results. This information will become more useful and versatile when it is organized in the form of EMR. The other major source is the daily healthcare devices, which present in various forms such as wrist band, finger rings or even chair and bed. These real-time biomedical or health monitors allow for the characterization of intra-individual physiological variation and the inter-individual impact of circadian fluctuations on physiological measures. Further, they provide the clinicians and scientists with temporal resolutions to examine physiology and therefore a new way to study human diseases. Two studies about how to acquire vital signs (heart rate, respiration rate, blood pressure and temperature) by noninvasive/wearable modalities will be shown below.
Wearable deep body thermometer
Deep body temperature (DBT) is the temperature of the natural cavities, such as abdomen and thorax. It is conventionally measured by the invasive methods using catheter inserted into rectum or esophagus. Alternative measurements inside the mouth or ear canal are also adopted for intermittent measurement. However, the fluctuation of DBT bears more information in its temporal variation, e.g., the circadian rhythm, therefore a wearable DBT thermometer being able to keep track of the DBT will provide more information about the fluctuation of physiology.
To develop a wearable Deep Body thermometer, the dual heat-flux method (DHFM) has been used. It calculates the DBT based on the heat flux inside a probe as shown in Fig. 1 (a). The double heat paths inside the probe shown by red arrows enable calculation of the DBT by the embedded temperature sensors. A substrate material with four embedded temperature sensors form the core of the probe. The substrate material has physical properties similar to those of skin and, when attached to the skin, most of the heat flow from the core body due to the difference between the DBT and the skin temperature will flow into the substrate material. After the initial period for heat equilibrium establishment, the DBT can be calculated with the four embedded temperature sensors. With this wearable modality, this DBT thermometer should be able to answer to the needs of realistic applications such as the prevention of heat stroke and the estimation/adjustment of disorder of circadian rhythm.
Fig. 1. Illustration (a) and the prototypes (b) of the wearable DBT thermometer.
Validations of device performance is on-going, what we can show is the studies about its accuracy and use in circadian rhythm estimation. We carried out a fast-changing CBT measurement (55 min, 12 subjects) inside a thermostatic chamber. When compared with a reference, the CoreTemp CM-210 by Terumo, the experiment shows 0.07 °C average difference of the prototype.
As for the circadian rhythm estimation, we performed long-term monitoring of CBT (24 h, 6 subjects), whose result shows no significant difference in parameters for the inference of circadian rhythm. A whole-length record of a subject is shown in Fig.2. It shows a very standard fluctuation of core body temperature that subjects to circadian rhythm. Red line denotes the measurement by the reference and blue line denotes the measurement by the DBT thermometer prototype. The cosine fitting curve was generated with the measurement by DHFM-based probe and shown in the broken black line.
Fig. 2. Instance of measurements of long-term monitoring of CBT and their fitting results by cosinor.
[1] M. Huang et al, “A Wearable thermometry for core body temperature measurement and Its Experimental Verification,” IEEE J. Biomed. Health Inform., 2016, Feb. for Epub
Non-occlusive blood pressure measurement
Blood pressure (BP) is another important physiological parameter that can’t be measured in an easy way. The standard occlusive method is for intermittent measurement and needs an inflatable cuff to occlude the arterial supply to the distal limb, so as to estimate the systolic and diastolic BP. But actually, the temporal variation of the BP provides important information about the cardiovascular physiology. A non-occlusive way, the so-called cuffless method, that can measure BP continuously can fully retain the temporal information.
we therefore tried to develop an unobtrusive cuffless BP monitoring system. This system is based on pulse transit time (PTT), which is defined as the time taken for an artery pulse to travel between two arterial sites, to facilitate long-term home BP monitoring.
PTT can be simplified as the time delay between the peak of the R wave in the electrocardiogram (ECG) and the corresponding point in photoplethysmogram (PPG) signals as shown in Fig. 3.
Fig. 3. Definition of PTT. PTT is the time between the R-wave of ECG signal and the point in the ascending phase of PPG with maximum first derivative.
Theoretically, we can consider that the pulse wave velocity (PWV), the velocity at which the blood travels along the vessel, is proportional to the square root of elastic module (EM) of the vessel. Further, the EM of the vessel increases exponentially with BP. Therefore, we may be able to estimate the BP based on the PWV.
The proposed system mainly includes an ECG module, a PPG module and the control unit and was implemented into a chair as shown in Fig. 4.
Fig. 4. proposed chair-based cuffless blood pressure monitoring system for home healthcare. ECG electrodes and PPG sensor are mounted on the two armrests of the chair, respectively. The estimated BP results can be displayed on a tablet PC or a smartphone via Bluetooth communication.
This method can estimate the BP fluctuation around the basic point, and therefore, needs calibration periodically. The duration, the longer the better, is closely related to the way of the calibration, such as the user should calibrate under peaceful condition, the gesture should be consistent in both calibration and measurement. Our system takes advantage from the setup in the form of the chair and we carried out the experiment to monitor the BP for 60 days with only one calibration at the very first day. Fig. 5 shows the result in whole length, where most differences are within the range of ± 10 mmHg for the former 42 days. Data from more subjects should be collected, but it shows the possibility that this system is capable to provide a stable BP measurement within one month.
Fig. 5. Comparison of the reference BP and estimated BP for 60 days with only one calibration.
[2] Z. Tang et al, “A Chair-based Unobtrusive Cuffless Blood Pressure Monitoring System Based on Pulse Transit Time.,” IEEE J. Biomed. Health Inform., Accepted for publication Oct. 2016.
Using the healthcare information
With the great amount of data, we could do more than just plotting the raw data, in other words, using this data for modeling and prediction for the personal physiology will make full use of the data. We should also bear in mind that the wearable and nonconscious devices are vulnerable to external influences, an appropriate way to remove the noisy signal so as to fully reveal its physiological significance initially, the so-called pre-processing, would be indispensable for the successive analyses.
As an example, a widely-acknowledged procedure for the pre-processing of electrocardiograph is the removal of high frequency noise and baseline wandering by corresponding filters. A low-pass finite impulse response (FIR) filter with its cut-off frequency around 40 Hz is suitable to remove high frequency noise, while a high-pass FIR filter with its cut-off frequency around 0.8 Hz is appropriate to remove the baseline wandering. For the signal acquired by wearable modality of relatively low quality, techniques such as biorthogonal wavelets would have a better performance.
With carefully processed healthcare information, we will be able to develop more sophisticated and elegant models for individual normal physiology, and enable identification of subtle or event-induced changes toward pathophysiology early in the course of disease progression.
Integration of health informatics with bioinformatics
Translating the finding from data-intensive biological studies to effective therapies, diagnostic acids and clinical interventions is common nowadays. Temporal profiling of a subject over 14 days using biological (genomics, proteomics, metabolomics and transcriptomics) and clinical phenotypes have revealed how longitudinal measurements of multiscale biological data showed the dynamics of biological pathway during illness and wellness [3].
This kind of works can be attributed to the relatively new domain of translational bioinformatics. Translational Bioinformatics is the development of storage, analytic, and interpretive methods to optimize the transformation of increasingly voluminous biomedical data, and genomic data, into proactive, predictive, preventive, and participatory health.
In the context of translational bioinformatics, individualized risk model being able to discern innocuous deviation from the average population from pathologic changes is of paramount importance.
It certainly is a fast-evolving and exciting domain, for there are a broad space to be explored. For example, how to choose the data streams and determine their clinical significances; how to embed these streams into EHR so as to integrate with biomedical data should be addressed before it can exert great impact on human health.
This domain will finally compose the intact image about personal health. And I do believe it will change the conventional clinical thinking about health in a way.
[3] R. Chen, et al. “Personal omics profiling reveals dynamic molecular and medical phenotypes.” Cell 148.6 (2012): 1293-1307.
「コードクローン」とはソースコード中に存在する一致または類似したコード片であり，コピーアンドペーストなどのさまざまな理由により生成されます．ソースコードの中に修正されるコード片のコードクローンが存在すれば，その全てのコードクローンに対して修正の是非を検討する必要があり，一般的にコードクローンの存在が保守作業を困難にさせると言われています．下の図はapache ant 1.6.3から検出されたコードクローンの例です．互いにコードクローンになってるコード片に色がつけられています．
交通渋滞は以前から大きな社会問題であり，二酸化炭素排出などの環境への悪影響や社会活動の滞りなどによって， 社会に悪影響を及ぼしています．当研究室では高度交通システム（Intelligent Transport Systems; ITS）を利用し，交通の効率化や快適化，渋滞の軽減のための研究を行っています．
[1] Jiaxing Xu, Weihua Sun, Naoki Shibata and Minoru Ito : “GreenSwirl: Combining Traffic Signal Control and Route Guidance for Reducing Traffic Congestion,” in Proc. of IEEE Vehicular Networking Conference 2014 (IEEE VNC 2014), pp. 179-186, 2014-12-15.
A payment system in a disaster area is essential for people to buy necessities such as groceries, clothing, and medical supplies. However, existing payment systems require the needed communication infrastructures (like wired networks and cellular networks) to enable transactions, so that these systems cannot be relied on in disaster areas, where these communication infrastructures may be destroyed. In [3], we propose a mobile payment system, adopting infrastructureless mobile adhoc networks (MANETs), which allow users to shop in disaster areas while providing secure transactions. Specifically, we propose an endorsement-based scheme to guarantee each transaction and a scheme to provide monitoring based on location information, and thus achieve transaction validity and reliability. Our mobile payment system can also prevent collusion between two parties and reset and recover attacks by any user. Security is ensured by using location-based mutual monitoring by nearby users, avoiding thereby double spending in the system.
[3] Babatunde Ojetunde, Naoki Shibata, Juntao Gao, and Minoru Ito : An Endorsement Based Mobile Payment System for A Disaster Area, in Proc. of The 29th IEEE International Conference on Advanced Information Networking and Applications (AINA-2015), pp. 482-489, Mar. 2015.
